The Human Leukocyte Antigen (HLA) DRB1*13:02 Allele Protects against Dementia in Continental Western Europe

Lisa M. James^1,2,3,4, Apostolos P. Georgopoulos^1,2,3,4,5*

¹Brain Sciences Center, Department of Veterans Affairs Health Care System, Minneapolis, MN, 55417, USA

²Department of Neuroscience, University of Minnesota Medical School, Minneapolis, MN 55455, USA

³Department of Psychiatry, University of Minnesota Medical School, Minneapolis, MN 55455, USA

⁴Center for Cognitive Sciences, University of Minnesota, Minneapolis, MN 55455, USA

⁵Department of Neurology, University of Minnesota Medical School, Minneapolis, MN 55455, USA

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Abstract

Human Leukocyte Antigen (HLA) Class II DRB1*13 alleles have recently been found to protect against age-related brain deterioration, even in the presence of apolipoprotein E4 (apoE4),^1,2 suggesting a possible protection against dementia. Here we evaluated the association between the population frequency of common DRB1*13 alleles and the prevalence of dementia in Continental Western Europe. Prevalence of dementia in Continental Western Europe was derived from published reports on dementia frequency from the Global Burden of Disease Study 2016 and population totals obtained from the Population Reference Bureau. DRB1*13:01 and DRB1*13:02 allele frequencies were obtained from a publicly available database (allelefrequency.net) and apolipoprotein E was obtained from published reports on the world distribution of apoE4. The prevalence of dementia in 14 Continental Western European (CWE) countries, where life expectancy is practically identical, significantly decreases exponentially with increasing frequency of DRB1*13:02 (R2 = 0.452, P = 0.008), even when adjusted for the prevalence of apolipoprotein E4 allele, a known risk factor for Alzheimer’s disease. This finding documents the protective effect of DRB1*13:02 on dementia prevalence in CWE. Since the function of HLA class II genes is to aid in the elimination of pathogens by enabling the production of antibodies against their antigens in specific immunity, the protective effect of DRB1*13:02 points to the presence of persistent harmful antigens as causal factors in development of dementia, antigens specific to DRB1*13:02 that could not be eliminated in its absence.

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Introduction

Dementia is now the 5^th leading cause of death, representing a significant global health problem³. Over 50 million people worldwide are living with dementia, and the number of affected individuals is expected to increase significantly over the next 30 years as the population ages. Western Europe has the largest number of people living with dementia^4,5 and has consistently been found to have one of the highest prevalence rates of dementia for individuals 60 years old and above^5,6. Within Western Europe, rates of dementia have been shown to vary substantially by country^7-9. Recent studies have documented reduced incidence of dementia across Western Europe which has been largely attributed to improved health and educational attainment¹⁰; however, such modifiable risk factors are estimated to account for only 35% of dementia risk¹¹, highlighting the sustained influence of genetic factors on this risk. A well-established genetic factor is the apolipoprotein E4 (apoE4) allele, with dementia risk increasing in a dose-dependent manner¹². However, several recent genome-wide association studies have implicated numerous other single nucleotide polymorphisms (SNPs) in dementia^13-15, supporting the role of genetic influences on dementia that extend beyond apoE4.

Human Leukocyte Antigen (HLA)

Recent evidence suggests that HLA genes, which play a critical in specific immunity, may also influence risk for dementia^13-16. Located in the Major Histocompatibility Complex (MHC) of chromosome 6, HLA genes code for glycoproteins that reside on the surface of most cells and facilitate elimination of foreign antigens. Two main classes of HLA genes, namely Class I (A, B, C) and Class II (DRB, DQB, DPB), facilitate immune protection from harmful antigens via presentation of endogenous antigenic peptides to CD8 receptors to signal cell destruction (Class I) or exogenous antigenic peptides to CD4 receptors to promote antibody production (Class II). Successful elimination of foreign antigens necessitates a match between one’s HLA genes and epitopes of those antigens; the absence of a match may result in persistent antigens that may, in turn, lead to neuronal damage^16,17. Although each person has a limited repertoire of HLA-coded proteins based on Mendelian inheritance (two alleles of each major Class I and Class II gene), resistance to foreign antigens is maximized at the population level via allelic diversity^18,19. Indeed, HLA genes are the most highly polymorphic in the human genome, and vary by region and ethnicity to promote elimination of local foreign antigens; yet, some alleles are more common than others^20,21, presumably conferring protection against common antigens such as viruses and bacteria.

Infections and Dementia

Numerous infectious viruses and bacteria including herpes viruses, Helicobacter pylori, Chlamydophila pneumoniae, and Borrelia burgdorfer, among others, have been implicated in dementia²². In fact, a prominent theory of dementia posits that reactivation of latent herpes simplex virus type 1 (HSV-1), particularly among apoE4 carriers, causes cumulative damage that ultimately results in Alzheimer’s dementia (AD)²³. To date, no single infectious cause of dementia has been conclusively identified but the evidence linking such pathogens to dementia is substantial²². Specifically, (1) various pathogens have been detected in brain tissues of individuals with AD, (2) chronic infections are associated with neurodegeneration, neurofibrillary tangles, and β-amyloid plaques, histopathological features that are considered to be the hallmarks of AD, and (3) neuroinflammation is common to many infectious diseases and is also characteristic of AD. Thus, it seems likely that infectious agents are associated with dementia; however, other factors including genetic composition, may moderate the association.

Persistent Antigens

We have proposed that HLA composition is a critical factor in disease outcomes, including dementia, following exposure to foreign antigens¹⁷. That is, if one’s HLA composition is a match for a specific antigen, the immune system is able to eliminate harmful effects of the antigen through cell destruction and/or antibody production. However, in the absence of an HLA-antigen match, the antigen may not be sufficiently eliminated, resulting in deleterious effects including inflammation, cell damage, and ultimately neurodegeneration. These harmful effects are hypothesized to be exacerbated in apoE4 carriers¹⁶. One function of apoE is neuronal repair; that is, apoE is synthesized in response to neural damage to facilitate repair. However, apoE4 is relatively less stable than other isoforms, resulting in neurotoxic fragments²⁴; consequently, the effect of apoE synthesis in E4 carriers may cause additional secondary neuronal damage¹⁶. In contrast, no secondary damage is expected in apoE2 or apoE3 carriers. Thus, HLA composition is hypothesized to play a primary role in disease outcomes following exposure to foreign antigens with apoE playing a secondary role¹⁶.

HLA Protection Against Neurodegeneration

Mounting evidence implicates HLA protection against various disease outcomes. For example, DRB1*13:01 and DRB1*13:02, which differ by a single amino acid and are among the most common alleles of the Class II DRB gene²¹, have been shown to confer protection against various autoimmune diseases^25,26, many of which have effects on the brain. DRB1*13:02 has also been shown to protect not only against the occurrence of Gulf War Illness,²⁷ a neuroimmune condition affecting veterans of the Persian Gulf War²⁸, but also against GWI-related brain atrophy²⁹ that is characteristic of the illness³⁰. Finally, we have recently shown protective effects of DRB1*13 alleles against age-related brain atrophy¹ and functional deterioration² in cognitively healthy women, even after accounting for presence of apoE4. That is, age-related brain atrophy and increasing neural network variability were observed in women without protective DRB1*13 alleles; no such age-related effects were found in those with the protective allele. Taken together, common DRB1*13 alleles confer protection against various conditions affecting the brain, including age-related brain deterioration, leading us to hypothesize that HLA DRB1*13:02 and DRB1*13:01 alleles may also protect against dementia¹⁶.

The Present Study

Here we tested the hypothesis that common HLA DRB1*13 alleles protect against dementia using a population-based, genetic-epidemiological approach. We assessed the association of the frequency of those alleles and prevalence of dementia in 14 countries of Continental Western Europe (CWE), namely Austria, Belgium, Denmark, Finland, France, Germany, Greece, Italy, Netherlands, Norway, Portugal, Spain, Sweden, and Switzerland.

Methods

For each of the 14 CWE countries, we obtained estimates of prevalence of dementia, frequency of HLA DRB1*13:02 and 13:01, prevalence of apoE4, and life expectancy as follows. Dementia prevalence was computed by dividing the number of people with dementia in 2016 in each country⁴ by the total population of the country in 2016³¹ and expressed as a percentage. We also tabulated the life expectancy³¹. These data are shown in Table 1. (b) The frequencies of DRB1*13:02 and DRB1*13:01 alleles were obtained on March 3, 2019 by querying the Allele*Frequencies database (http://www.allelefrequencies.net) . We calculated the average frequency of DRB1*13:02 and DRB1*13:01 across different studies within each country using high-resolution (4-digit) typing; the average frequency of each allele per country and sample size is shown in Table 2. Finally, (c) the apoE4 prevalence was obtained from Singh et al.³² and shown in Table 3.

Table 1. Dementia prevalence and life expectancy for countries in continental Western Europe.

Country	N Dementiaa	N total populationb	Dementia Prevalence	Life expectancy womenb	Life expectancy menb	Average life expectancy
Austria	126914	8800000	1.442	84	79	81.5
Belgium	181350	11300000	1.605	84	79	81.5
Denmark	55336	5700000	0.971	82	79	80.5
Finland	83950	5500000	1.526	85	78	81.5
France	877760	64600000	1.359	85	79	82
Germany	1201668	82600000	1.455	83	78	80.5
Greece	192563	10800000	1.783	84	78	81
Italy	1370308	60600000	2.261	85	80	82.5
Netherlands	192425	17000000	1.132	83	80	81.5
Norway	67207	5200000	1.292	84	80	82
Portugal	166660	10300000	1.618	83	77	80
Spain	830915	43300000	1.919	85	80	82.5
Sweden	142735	9900000	1.442	84	80	82
Switzerland	115476	8400000	1.375	85	81	83

^a Obtained from Nichols et al., 2019.^4b Obtained from Population Reference Bureau, 2016³¹.

Table 2. HLA DRB1*13:01 allele frequency per country in continental Western Europe.^a

Country	Sample size (2n)	DRB1*13:02 frequency	DRB1*13:01 frequency
Austria	400	0.062	0.062
Belgium	198	0.035	0.076
Denmark	110	0.056	0.083
Finland	482	0.025	0.087
France	1260	0.047	0.058
Germany	140300	0.043	0.067
Greece	1848	0.033	0.035
Italy	12562	0.038	0.051
Netherlands	3632	0.062	0.072
Norway	362	0.050	0.080
Portugal	550	0.036	0.084
Spain	3850	0.033	0.076
Sweden	568	0.038	0.072
Switzerland	41664	0.053	0.067

a. Obtained from allelefrequencies.net March 3, 2019.

Table 3. ApoE4 prevalence per country in continental Western Europe.^a

Country	Sample size	ApoE4 prevalence
Austria	683	0.105
Belgium	1660	0.128
Denmark	1620	0.127
Finland	7285	0.215
France	8247	0.114
Germany	6123	0.132
Greece	216	0.065
Italy	4189	0.083
Netherlands	5484	0.154
Norway	1097	0.174
Portugal	381	0.169
Spain	4863	0.094
Sweden	686	0.205
Switzerland	2061	0.109

a. Obtained from Singh et al., 2006³².

Statistical Analyses

Standard statistical analyses were performed including calculating univariate descriptive statistics (mean, standard deviation, coefficient of variation) and regression and correlation analyses between dementia prevalence and allele frequency. All statistical analyses were conducted using the IBM-SPSS statistical package (version 23).

Results

Life expectancy

Life expectancy was practically identical in the 14 CWE countries (mean ± SD, coefficient of variation): 79.1 ± 1.1 y, 1.4% (men), 84.0 ± 0.96 y, 1.1% (women), 81.6 ± 0.14 y, 1.0% (average between men and women).

Effect of DRB1*13:02 on dementia prevalence

The prevalence of dementia decreased exponentially with increasing frequency of DRB1*13:02 (Fig. 1A-B), according to the following regression equation:

Dementia Prevalence (%) = 2.529e^{-12.275_f1302} (1)

Fig 1: Dementia prevalence (5) is plotted against DRB1*13:02 frequency with countries identified by names (A) or national flags (B). (See text for details.)

where f is the frequency of DRB1*13:02. This model was highly statistically significant (P = 0.008) and explained 45.2% of the variance (R² = 0.452). Fig. 2 illustrates graphically the substantial magnitude of this protective effect: doubling the DRB1*13:02 frequency (from 0.03 to 0.06) is associated with 31% reduction of dementia prevalence (from 1.75% to 1.21%).

Fig 2: Illustration of the quantitative effect of DRB1*13:02 frequency on dementia prevalence, based on the fitted exponential fit of equation 2 (see text). An increase of 100% (doubling) of the DRB1*13:02 frequency results in 31% reduction in dementia prevalence.

By taking the natural logarithms (ln) on both sides, we get, equivalently,

ln(Dementia Prevalence %) = ln⁡(2.529)-12.275f₁₃₀₂=0.928-12.275f₁₃₀₂ (2)

This effect was robust (Spearman’s rank correlation=-0.750, P = 0.002). These findings indicate a protective role of the DRB1:13:02 allele for dementia. In addition, this effects was independent of apoE4 prevalence since it was still present and highly significant when the effect of apoE4 prevalence was partialed out; specifically, the partial correlation of dementia prevalence vs DRB1*13:02 frequency, accounting for apoE4 prevalence, was -0.782, P = 0.002).

Effect of DRB1*13:01 on dementia prevalence

Dementia prevalence decreased with increasing frequency of DRB1*13:01 but this relation did not reach statistical significance (R² = 0.157, P = 0.161; exponential fit); the partial correlation of dementia prevalence vs. DRB1*13:01 frequency, accounting for apoE4 prevalence, was -0.218, P = 0.474).

Discussion

These results extend prior findings demonstrating protective effects of HLA DRB1*13:02 on brain structure¹ and function² in healthy individuals to suggest DRB1*13:02 protects against dementia at the population level. The mechanisms through which HLA DRB1*13:02 confers protection against dementia remain to be elucidated; however, the primary role of HLA DRB1*13:02 (and other HLA Class II alleles) in elimination of foreign antigens via antibody production suggests that host protection from foreign antigens plays an integral role. While elimination of foreign antigens appears to protect against dementia, the persistent antigen hypothesis¹⁷ posits that inability to eliminate foreign antigens results in inflammation and neural damage that may ultimately result in neurodegeneration and dementia. DRB1*13:02 and DRB1*13:01 differ by a single amino acid; yet that small difference alters the electrostatic properties of the binding groove³³ which is reflected in differential ability to bind to exogenous antigenic peptides as a first step in antibody production. Such binding differences are likely associated with the current finding that DRB1*13:02 but not DRB1*13:01 was highly significantly associated with protection from dementia. In light of the present findings, the antigens to which HLA DRB1*13:02 bind take on new relevance in terms of protection against dementia. A search of human studies in the immune epitope database (IEDB; retrieved March 4, 2019) indicates that 1820 epitopes from 153 antigens bind to HLA-DRB1*13:02, including several from viruses such as hepatitis B and C, HIV, several types of herpes virus, influenza, mycobacterium tuberculosis, and malaria, among others. That is, DRB1*13:02 carriers are equipped to create antibodies to facilitate elimination of these antigens; in the absence of a match, the antigens may persist and create negative downstream effects including dementia.

Given the widely recognized association between apoE4 and dementia risk, the current findings that DRB1*13:02 prevalence is negatively associated with dementia prevalence, independently of apoE4, is particularly noteworthy and consistent with our prior findings that DRB1*13:02 protects against age-related deterioration in brain function in healthy women, regardless of apoE4 genotype². Taken together, these findings suggest that apoE4 effects are secondary to HLA³⁴. To that end, we have recently posited that the risk associated with apoE4 status is negated given an HLA-antigen match¹⁶. In contrast, in the absence of an HLA-antigen match, persistent antigens cause neural damage which, in turn, activates synthesis of apoE to facilitate neuronal repair²⁴. Whereas apoE2 and apoE3 may enable neuronal repair, neurotoxic apoE4 fragments may cause additional neuronal damage. That perspective, together with the present findings, shines the spotlight on HLA as playing a fundamental role in preventing dementia. As such, we would expect HLA DRB1*13:02 to be scarce among individuals with dementia.

Limitations

The main limitation of this study is that in some countries apoE and DRB1*13 allele frequencies were derived from relatively small samples; we assume the frequencies accurately reflect the population prevalence. In addition, the present study focused exclusively on DRB1*13:01 and DRB1*13:02 based on our prior work demonstrating protective effects of those alleles against brain deterioration in healthy women. The present results do not preclude the possibility of other protective HLA alleles; indeed, studies evaluating the association of other HLA alleles with dementia prevalence are underway.

Conclusions

Our results suggest that DRB1*13:02 protects against dementia, implicating adaptive immunity and elimination of foreign antigens in dementia prevention. Future studies aimed at identifying and eliminating persistent harmful antigens that contribute to dementia may prove useful in reducing the global burden of dementia.

Acknowledgements

Partial funding was provided by the University of Minnesota (the Kunin Professorship for Women's Healthy Brain Aging, the McKnight Presidential Chair of Cognitive Neuroscience, and the American Legion Brain Sciences Chair) and the U.S. Department of Veterans Affairs. The sponsors had no role in the current study design, analysis or interpretation, or in the writing of this paper. The contents do not represent the views of the U.S. Department of Veterans Affairs or the United States Government.

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